I’m not sure why my app is still live updating to the old app after I cloned the app. I created a new app on app flow and copied the app id into the app.module,config.xml(for Cordova Plugin Ionic), package.json, and even package.lock.json. I created a new .ipa and bundle identifier for the app and uploaded it to a server and it works perfect when first downloaded but when the live update hits, it reverts back to the old app. I haven’t had this problem before, but I’m sure everything referencing the old app is now referencing the new app.
I think that your problem is being caused by the native versioning of AppFlow. What I would do is change the version of the app to a greater number and versionate all the older commits to a smaller version
And on your config.xml something above 0.0.0 like 0.0.1 or higher. I dont know if the versioning has some issue or I wasnt using it right, but when I had a problem like an app updating when I didnt want, this is what I did.