Handle multi system with capacitor

Is there any guide or steps to manage the capacitor project in the better way.
For example: Cordova was having config.xml so when we check out the project in the another system it will have the plugin configuration and some other settings related to project

In the capacitor we don’t have anything like config.xml we only have capacitor.config.json which have only very basic options it don’t have some project related settings and config keys changes.

So how should we mange this projects when we switch the systems

With Capacitor you should add the whole native projects (android and ios directories) to your source control.

Read more here: Capacitor - build cross platform apps with the web